Information for 5-ACATTAACCATCA (Motif 8)

C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C G T C G T A C T G A A C G T C T A G A C G T
p-value:1e-6
log p-value:-1.427e+01
Information Content per bp:1.960
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif4.44%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.2 +/- 23.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ACATTAACCATCA-------
---TCACCCATCAATAAACA
 C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ACATTAACCATCA
TCATCAATCA---
 C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ACATTAACCATCA---
-NNNTAACAATTATAN
 C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:ACATTAACCATCA-
----AAACMATTAN
 C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

PH0017.1_Cux1_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ACATTAACCATCA---
-TAGTGATCATCATTA
 C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T
A C G T G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

PB0109.1_Bbx_2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ACATTAACCATCA
NNNNCTGTTAACNNTNN
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACATTAACCATCA
RGCCATYAATCA---
 A C G T A C G T C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ACATTAACCATCA
YCATTAMC-----
 C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ACATTAACCATCA-
--GYCATCMATCAT
 C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A A C G T
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PH0040.1_Hmbox1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ACATTAACCATCA---
GANGTTAACTAGTTTNN
 A C G T C G T A A G T C C G T A A G C T A C G T C G T A C G T A A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C