Information for 1-GKKTTGAGTG (Motif 4)

A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G
Reverse Opposite:
A G T C G C T A A G T C C G A T A G T C C G T A G T C A G T C A G T C A A T G C
p-value:1e-6
log p-value:-1.553e+01
Information Content per bp:1.807
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif884.4
Percentage of Background Sequences with motif1.88%
Average Position of motif in Targets40.0 +/- 27.6bp
Average Position of motif in Background50.3 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:GKKTTGAGTG---
--CTTGAGTGGCT
 A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:GKKTTGAGTG---
---TTGAGTGSTT
 A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GKKTTGAGTG---
---TTRAGTGSYK
 A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GKKTTGAGTG--
--BTBRAGTGSN
 A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G A C G T A C G T
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GKKTTGAGTG--
--CTYRAGTGSY
 A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G A C G T A C G T
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GKKTTGAGTG---
---TTAAGTGCTT
 A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GKKTTGAGTG-
---TTGATTGN
 A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G A C G T
A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GKKTTGAGTG--
---TTAAGTGGT
 A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GKKTTGAGTG--
---TTAAGTGGN
 A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GKKTTGAGTG-
--NTCAAGTGG
 A T C G A C G T A C G T A C G T C G A T A C T G C G T A A C T G C G A T T C A G A C G T
A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G