Information for 6-GGCAGAAAGRMAR (Motif 12)

A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A G C T A G T C A C G T A C G T A G C T A G T C C A G T A C T G A G T C A G T C
p-value:1e-4
log p-value:-1.032e+01
Information Content per bp:1.862
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif47.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets54.3 +/- 4.2bp
Average Position of motif in Background55.2 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGCAGAAAGRMAR--
---AGAAACGAAAGT
 A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A A C G T A C G T
A C G T A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGCAGAAAGRMAR
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGCAGAAAGRMAR
-ACAGGAAGTG--
 A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A
A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGAAAGRMAR
TGGCAGNCTGCCAG
 A C G T A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGCAGAAAGRMAR
TGGCACCATGCCAA
 A C G T A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGCAGAAAGRMAR-----
GGAAGGAAGGAAGGAAGG
 A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCAGAAAGRMAR
GGAACAAAGR---
 A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCAGAAAGRMAR
AAAACAAAGG---
 A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGCAGAAAGRMAR
AACAGGAAGT---
 A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GGCAGAAAGRMAR--
WNAGTCADAVTGAAACTN
 A C G T A C G T A C G T A C T G C T A G A G T C G C T A A C T G C T G A G T C A C G T A A C T G C T G A G T A C C G T A C T G A A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G