Information for 2-TGAATATGNYTGAAAT (Motif 7)

A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
Reverse Opposite:
T C G A G A C T A G C T C G A T G T A C C G T A C T G A C A G T A G T C G T C A A G C T C G T A G C A T C G A T G T A C G T C A
p-value:1e-13
log p-value:-3.043e+01
Information Content per bp:1.690
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif46.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets51.4 +/- 26.6bp
Average Position of motif in Background52.1 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGAATATGNYTGAAAT
ATGAATATTCATGAG--
 A C G T A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGAATATGNYTGAAAT
ATGMATATDC-------
 A C G T A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HSF1/MA0486.2/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGAATATGNYTGAAAT
-GAACGTTCTAGAA--
 A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
A C G T C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------TGAATATGNYTGAAAT
NTTNTATGAATGTGNNC-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGAATATGNYTGAAAT
ATGAATATTC-------
 A C G T A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HSF2/MA0770.1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGAATATGNYTGAAAT
-GAANGTTCTAGAA--
 A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
A C G T T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A A C G T A C G T

HSF4/MA0771.1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGAATATGNYTGAAAT
-GAANNTTCTAGAA--
 A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
A C G T T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A A C G T A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TGAATATGNYTGAAAT
--GAAATGACTCA---
 A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
A C G T A C G T C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.51
Offset:-7
Orientation:reverse strand
Alignment:-------TGAATATGNYTGAAAT
NNTNTCATGAATGT---------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:TGAATATGNYTGAAAT
-------NATTCAAAT
 A C G T C A T G C G T A C G T A G C A T T C G A C A G T T C A G G T C A G A C T C G A T A C T G C G T A C T G A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T