Information for 3-CAKGRTTTTTMWT (Motif 3)

A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T
Reverse Opposite:
C G T A C G T A A C G T C G T A C G T A G T C A C G T A C G T A A G T C A G T C G T C A A C G T T C A G
p-value:1e-13
log p-value:-3.149e+01
Information Content per bp:1.845
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 27.7bp
Average Position of motif in Background55.6 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0148.1_Mtf1_2/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CAKGRTTTTTMWT----
---NNTTTTTCTTATNT
 A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAKGRTTTTTMWT-----
--NNANTTTTATTGGNNN
 A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAKGRTTTTTMWT-----
--NNAATTTTATTGGNTN
 A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CAKGRTTTTTMWT--
-----TTTTTATTGG
 A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CAKGRTTTTTMWT--
-----NTTTTATTGG
 A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CAKGRTTTTTMWT--
-----NTTTTATTGG
 A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

PB0093.1_Zfp105_1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CAKGRTTTTTMWT----
--NTNTTGTTGTTTGTN
 A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CAKGRTTTTTMWT--
-----TTTTTATTGC
 A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAKGRTTTTTMWT-----
-NTNAATTTTATTGNATT
 A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CAKGRTTTTTMWT---
------TTTTATTRGN
 A G T C C G T A A C G T C T A G C T A G A C G T A C G T A C G T A C G T G A C T G T C A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A