Information for 15-TTCAGGTCAGTGACAG (Motif 22)

A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G
Reverse Opposite:
A G T C C G A T A C T G A G C T A G T C T C G A A G T C C G A T A C T G T C G A G T A C G T A C A C G T C T A G C T G A G T C A
p-value:1e-10
log p-value:-2.512e+01
Information Content per bp:1.683
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.6 +/- 21.8bp
Average Position of motif in Background59.0 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTCAGGTCAGTGACAG
-TRAGGTCA-------
 A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTCAGGTCAGTGACAG-
---AGGTCANTGACCTN
 A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G A C G T
A C G T A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

ZEB1/MA0103.2/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TTCAGGTCAGTGACAG
--CAGGTGAGG-----
 A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G
A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTCAGGTCAGTGACAG
ATCAAGGTCA-------
 A C G T A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTCAGGTCAGTGACAG
---AGGTCA-------
 A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TTCAGGTCAGTGACAG
--CAGGTAAGTAT---
 A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G
A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TTCAGGTCAGTGACAG
---AGGTCAAGGTCA-
 A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G
A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TTCAGGTCAGTGACAG
---AGGTCAAGGTCA-
 A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TTCAGGTCAGTGACAG-----
---RGGTCADNNAGAGGTCAV
 A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

RARA::RXRA/MA0159.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TTCAGGTCAGTGACAG----
---AGGTCACGGAGAGGTCA
 A C G T A G C T A G T C C G T A C A T G A C T G A G C T G T A C C G T A C T A G A G C T T C A G T C G A T A G C G C T A T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A