Information for 17-ACAAAAGNNKCWMAGA (Motif 24)

C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G C G A T A C T G G T A C A G T C A C G T G T A C A C G T A G C T C G A T A C G T C A T G C G A T
p-value:1e-3
log p-value:-8.402e+00
Information Content per bp:1.654
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif13.04%
Number of Background Sequences with motif171.1
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets54.4 +/- 22.9bp
Average Position of motif in Background52.7 +/- 36.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.50
Offset:5
Orientation:forward strand
Alignment:ACAAAAGNNKCWMAGA-----
-----CGAAGCACACAAAATA
 C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.50
Offset:5
Orientation:forward strand
Alignment:ACAAAAGNNKCWMAGA-----
-----AGCGGCACACACGCAA
 C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Mecom/MA0029.1/Jaspar

Match Rank:3
Score:0.46
Offset:2
Orientation:forward strand
Alignment:ACAAAAGNNKCWMAGA
--AAGATAAGATAACA
 C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A
A C G T A C G T C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.46
Offset:5
Orientation:forward strand
Alignment:ACAAAAGNNKCWMAGA----
-----AGATGKDGAGATAAG
 C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:5
Score:0.45
Offset:3
Orientation:reverse strand
Alignment:ACAAAAGNNKCWMAGA-------
---GAAGTANCACGAATNMRAGT
 C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.45
Offset:-1
Orientation:forward strand
Alignment:-ACAAAAGNNKCWMAGA
ATTTACAGTAGCAAAA-
 A C G T C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:7
Score:0.45
Offset:-6
Orientation:forward strand
Alignment:------ACAAAAGNNKCWMAGA
TACTGGAAAAAAAA--------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:8
Score:0.45
Offset:5
Orientation:forward strand
Alignment:ACAAAAGNNKCWMAGA-----
-----ATATCAAAACAAAACA
 C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.45
Offset:-1
Orientation:reverse strand
Alignment:-ACAAAAGNNKCWMAGA
RACAAWGG---------
 A C G T C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:10
Score:0.45
Offset:-1
Orientation:forward strand
Alignment:-ACAAAAGNNKCWMAGA
ATGTACAGTAGCAAAG-
 A C G T C G T A G A T C G T C A C G T A T C G A C G T A A C T G C G T A A C T G A C T G G T A C C G T A G T A C C G T A T A C G C G T A
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T