Information for 9-CAGACACTGC (Motif 13)

A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C
Reverse Opposite:
C T A G A G T C C G T A A C T G C G A T A C T G A C G T A G T C A C G T A C T G
p-value:1e-2
log p-value:-4.922e+00
Information Content per bp:1.874
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif4.35%
Number of Background Sequences with motif99.9
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets43.7 +/- 26.0bp
Average Position of motif in Background47.4 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACTGC
BCAGACWA---
 A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACTGC
CCAGACAG---
 A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACTGC
CCAGACRSVB-
 A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------CAGACACTGC-
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAGACACTGC-
--GACAATGNN
 A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C A C G T
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CAGACACTGC
ATGCCAGACN----
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CAGACACTGC
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGACACTGC---
CTCACACAATGGCGC
 A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CAGACACTGC
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------CAGACACTGC
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T