Information for 4-CWTGAMCTTSHYA (Motif 9)

A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A
Reverse Opposite:
G C A T T C A G C T A G A T C G G C T A T C G A C A T G A C T G C G A T T A G C C G T A C G T A C T A G
p-value:1e-5
log p-value:-1.338e+01
Information Content per bp:1.540
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif3911.1
Percentage of Background Sequences with motif8.12%
Average Position of motif in Targets53.4 +/- 27.6bp
Average Position of motif in Background49.0 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Esrrg/MA0643.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CWTGAMCTTSHYA
-ATGACCTTGA--
 A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A
A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CWTGAMCTTSHYA
BNTGDCCTTG---
 A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CWTGAMCTTSHYA
-NTGACCTTGA--
 A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A
A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CWTGAMCTTSHYA
NATGACCTTGA--
 A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CWTGAMCTTSHYA-
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CWTGAMCTTSHYA
-GTGACCTT----
 A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CWTGAMCTTSHYA
--TGACCTTGAT-
 A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CWTGAMCTTSHYA
--TGACCTTGAV-
 A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A
A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CWTGAMCTTSHYA
TGACCTTGACCT-----
 A C G T A C G T A C G T A C G T A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CWTGAMCTTSHYA
--TGACCTYA---
 A G T C G C A T A C G T A T C G G C T A T G A C G A T C A G C T C G A T T A G C G A T C A G T C C G T A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T