Information for 5-YGTRCYYRRGYAC (Motif 9)

A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C
Reverse Opposite:
A C T G A C G T C T A G A G T C A G C T A G C T C T A G C T A G A C T G A G T C C G T A A G T C C T G A
p-value:1e-5
log p-value:-1.357e+01
Information Content per bp:1.798
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif25.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets66.0 +/- 33.2bp
Average Position of motif in Background56.4 +/- 49.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-YGTRCYYRRGYAC
CTGTTCCTGG----
 A C G T A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---YGTRCYYRRGYAC
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:YGTRCYYRRGYAC-
--TTCTNNAGAANT
 A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A G T C G A C T A G C T C T G A C T G A C T A G C G T A C G T A T C G A G A C T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----YGTRCYYRRGYAC
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A C G T A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:YGTRCYYRRGYAC-------
---TTCNAAGTACTTNNNNN
 A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-YGTRCYYRRGYAC
ACATGCCCGGGCAT
 A C G T A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:YGTRCYYRRGYAC
--TTCCKNAGAA-
 A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C
A C G T A C G T G A C T C A G T G A T C G A T C A C G T G A T C C T G A T A C G C G T A G T C A A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:YGTRCYYRRGYAC------
---CTTTAAGTACTTAATG
 A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

Stat6/MA0520.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-YGTRCYYRRGYAC-
CATTTCCTGAGAAAT
 A C G T A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C A C G T
A T G C C G T A A G C T A C G T C G A T G T A C G A T C C G A T T A C G C T G A C A T G C G T A C T G A T G C A G A C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.52
Offset:7
Orientation:forward strand
Alignment:YGTRCYYRRGYAC----
-------AAGCACTTAA
 A G C T A C T G A C G T C T A G A G T C A G T C A G T C C T G A C T G A A C T G G A C T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A