Information for 4-GAGCACGCAT (Motif 15)

A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C G T A G T C
p-value:1e-4
log p-value:-9.578e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets95.0 +/- 0.0bp
Average Position of motif in Background36.5 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GAGCACGCAT
---CACGCA-
 A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GAGCACGCAT
TBGCACGCAA
 A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GAGCACGCAT
--GCACGTAY
 A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GAGCACGCAT
--GCACGTNC
 A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGCACGCAT----
TCGTACCCGCATCATT
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAGCACGCAT
-BGCACGTA-
 A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGCACGCAT
GGGAGGACNG--
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAGCACGCAT-
GGACCACCCACG
 A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T A C G T
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGCACGCAT--
--GCACGTACCC
 A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

PB0099.1_Zfp691_1/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCACGCAT--
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G