Information for 6-CTGTAWTYTSWMM (Motif 10)

A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C
Reverse Opposite:
A C T G A C G T C G A T A T G C C G T A C T G A C G T A C G T A A C G T C G T A G T A C C G T A A T C G
p-value:1e-5
log p-value:-1.258e+01
Information Content per bp:1.816
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif41.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets78.5 +/- 13.5bp
Average Position of motif in Background48.9 +/- 55.8bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CTGTAWTYTSWMM
AGGACGCTGTAAAGGGA--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTGTAWTYTSWMM
GYCTGGYYTNTGTCA
 A C G T A C G T A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTGTAWTYTSWMM
AAGACGCTGTAAAGCGA--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTGTAWTYTSWMM
AAGACGCTGTAAAGCGA--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGTAWTYTSWMM
CACTAATT-----
 A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C
G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGTAWTYTSWMM
GCTGTG--------
 A C G T A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTGTAWTYTSWMM-
--GWAAYHTGABMC
 A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C A C G T
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Hnf4a/MA0114.3/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGTAWTYTSWMM--
ATTGGACTTTGACCCC
 A C G T A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGTAWTYTSWMM----
-TGGACTTTGNNCTNTG
 A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

PB0169.1_Sox15_2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CTGTAWTYTSWMM
TTGAATGAAATTCGA--
 A C G T A C G T A C G T A C G T A T G C A C G T A C T G A C G T C G T A C G A T A C G T A G C T A C G T A T C G C G T A G T C A G T A C
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A A C G T A C G T