Information for 9-CCCTGACCTTCCT (Motif 12)

A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T
Reverse Opposite:
G C T A A C T G A C T G G T C A T C G A C T A G A C T G A C G T G A T C G T C A A C T G A C T G A C T G
p-value:1e-7
log p-value:-1.692e+01
Information Content per bp:1.738
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif36.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets49.2 +/- 32.8bp
Average Position of motif in Background52.2 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCCTGACCTTCCT
TGACCTTGACCT----
 A C G T A C G T A C G T A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCCTGACCTTCCT
TGACCTTGACCT----
 A C G T A C G T A C G T A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCCTGACCTTCCT
---TGACCT----
 A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCCTGACCTTCCT
--GTGACCTT---
 A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCCTGACCTTCCT
NNACTTACCTN---
 A C G T A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCCTGACCTTCCT-
TCCCAGMCRAGCCCC
 A C G T A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCCTGACCTTCCT
--NTGACCTTGA-
 A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCCTGACCTTCCT
---TGACCTTGAT
 A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCCTGACCTTCCT
--ATGACCTTGA-
 A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T
A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCCTGACCTTCCT
-BNTGDCCTTG--
 A G T C A G T C A G T C C A G T C A T G T G C A G T A C A G T C A C G T A C G T T G A C A G T C C G A T
A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T