Information for 7-TGGAGTTGCGGCG (Motif 9)

A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G
Reverse Opposite:
A G T C A T C G G T A C A G T C C A T G A G T C G T C A C T G A A T G C A C G T A G T C A G T C C T G A
p-value:1e-15
log p-value:-3.611e+01
Information Content per bp:1.785
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.6 +/- 31.0bp
Average Position of motif in Background28.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGAGTTGCGGCG
CGCAGCTGCG---
 A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----TGGAGTTGCGGCG
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C G T A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGGAGTTGCGGCG----
NAGANTGGCGGGGNGNA
 A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

PB0110.1_Bcl6b_2/Jaspar

Match Rank:4
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TGGAGTTGCGGCG--
NNTNAGGGGCGGNNNN
 A C G T A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G A C G T A C G T
A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TGGAGTTGCGGCG
SDGCAGGTGCNS--
 A C G T A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:TGGAGTTGCGGCG----
---------GGCGCGCT
 A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

TCF4/MA0830.1/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TGGAGTTGCGGCG
NNCAGGTGCG---
 A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G A C G T A C G T A C G T

PB0202.1_Zfp410_2/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:TGGAGTTGCGGCG------
--NNTNNGGGGCGGNGNGN
 A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C A G T C G A T G C A T T A C G A C T G T A C G A C T G T G A C T C A G C T A G C T A G C T A G C A G T C T A G T C G A

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TGGAGTTGCGGCG--
AGATGCTRCTRCCHT
 A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G A C G T A C G T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

GFY(?)/Promoter/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TGGAGTTGCGGCG
GGGAATTGTAGT-
 A G C T A C T G C T A G G T C A A T C G G A C T A C G T A C T G G A T C C T A G A C T G A T G C A C T G
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T