Information for 9-AGCAAAGGAG (Motif 24)

T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G
Reverse Opposite:
G A T C A C G T A T G C A G T C G A C T A G C T G A C T A T C G G A T C A G C T
p-value:1e-12
log p-value:-2.767e+01
Information Content per bp:1.666
Number of Target Sequences with motif207.0
Percentage of Target Sequences with motif22.87%
Number of Background Sequences with motif476.5
Percentage of Background Sequences with motif14.10%
Average Position of motif in Targets48.7 +/- 27.4bp
Average Position of motif in Background50.7 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----AGCAAAGGAG--
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----AGCAAAGGAG--
NNNAGATCAAAGGANNN
 A C G T A C G T A C G T A C G T A C G T T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

PB0040.1_Lef1_1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----AGCAAAGGAG--
NANAGATCAAAGGGNNN
 A C G T A C G T A C G T A C G T A C G T T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AGCAAAGGAG--
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGCAAAGGAG
AACAAAGG--
 T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGCAAAGGAG--
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T A C G T T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G A C G T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

PB0083.1_Tcf7_1/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGCAAAGGAG--
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T A C G T T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGCAAAGGAG
AAAACAAAGG--
 A C G T A C G T T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGCAAAGGAG
ACATCAAAGGNA
 A C G T A C G T T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

TCF7L2/MA0523.1/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGCAAAGGAG
AAAGATCAAAGGAA
 A C G T A C G T A C G T A C G T T C G A C A T G T A G C C T G A T C G A C T G A T C A G T A C G T G C A C T A G
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A