Information for 4-GCTCAAAGTCCCA (Motif 4)

C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A
Reverse Opposite:
C A G T A T C G T A C G A T C G T C G A G T A C G C A T A C G T C G A T A C T G C G T A T C A G G A T C
p-value:1e-13
log p-value:-3.085e+01
Information Content per bp:1.645
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.91%
Number of Background Sequences with motif184.0
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets41.6 +/- 25.6bp
Average Position of motif in Background52.5 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCTCAAAGTCCCA-
GGGGTCAAAGTCCAAT
 A C G T A C G T C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCTCAAAGTCCCA---
GGCAAAAGTCCAATAA
 C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCTCAAAGTCCCA
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCTCAAAGTCCCA
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

GFY(?)/Promoter/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCTCAAAGTCCCA
ACTACAATTCCC-
 C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCTCAAAGTCCCA
-NTCAAGGTCA--
 C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCTCAAAGTCCCA
--TCAAGGTCATA
 C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A
A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCTCAAAGTCCCA
AAGTTCAAGGTCAGC
 A C G T A C G T C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCTCAAAGTCCCA
-BTCAAGGTCA--
 C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCTCAAAGTCCCA------
RACTACAACTCCCAGVAKGC
 A C G T C T A G A G T C G C A T T A G C G C T A T G C A C G T A C A T G A G C T T A G C A G T C T A G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C