Information for 5-AGCAGGTCAGCCA (Motif 7)

C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A C G T C T A G C G T A A G T C A G T C A C G T T C A G A T G C A C G T
p-value:1e-10
log p-value:-2.481e+01
Information Content per bp:1.943
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.8 +/- 27.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGCAGGTCAGCCA
---AGGTCA----
 C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGCAGGTCAGCCA
--CAGGTGAGG--
 C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A
A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGCAGGTCAGCCA
ATCAAGGTCA----
 A C G T C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGCAGGTCAGCCA
AAYTAGGTCA----
 A C G T C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGCAGGTCAGCCA
-TRAGGTCA----
 C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGCAGGTCAGCCA
TATAAGTAGGTCAA---
 A C G T A C G T A C G T A C G T C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGCAGGTCAGCCA
-AGRGGTCA----
 C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AGCAGGTCAGCCA---
-----GTCAGCANNTN
 C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGCAGGTCAGCCA
--AAGGTCAC---
 C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGCAGGTCAGCCA
--CAGGTAAGTAT
 C G T A A T C G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A G T C C G T A
A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T