Information for 4-CAGCCAATCC (Motif 5)

G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C
Reverse Opposite:
A C T G C T A G T C G A A C G T A C G T A C T G C T A G A G T C C G A T C A T G
p-value:1e-10
log p-value:-2.532e+01
Information Content per bp:1.832
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif201.1
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets52.7 +/- 25.4bp
Average Position of motif in Background51.0 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAATCC
ACTAGCCAATCA
 A C G T A C G T G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAGCCAATCC-
-AGCCAATCGG
 G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAATCC
BCAGACWA---
 A C G T G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCAATCC----
GNNAGCTAATCCCCCN
 A C G T A C G T G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C A C G T A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CAGCCAATCC
-TGCCAA---
 G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CAGCCAATCC-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATCC
CGTGCCAAG--
 A C G T G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATCC-
SCTGTCAVTCAV
 A C G T G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATCC-
NCTGTCAATCAN
 A C G T G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CAGCCAATCC
--GCTAATCC
 G T A C C G T A A C T G G A T C A G T C G T C A T G C A A G C T A G T C G T A C
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C