Information for 11-GAATTTATGA (Motif 17)

A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A G T C
p-value:1e-6
log p-value:-1.483e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.8 +/- 18.9bp
Average Position of motif in Background50.3 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GAATTTATGA-
-NTTTTACGAC
 A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GAATTTATGA--
DGWTTTATGRCN
 A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GAATTTATGA-----
NAATTTTACGAGNTNN
 A C G T A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GAATTTATGA-
GGACTGAATTCATGCC
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GAATTTATGA-
-NTTTTATGAC
 A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GAATTTATGA-----
NNNATTTTACGACNNTN
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0065.1_Hoxc10/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GAATTTATGA-----
ANNTTTTACGACNTNN
 A C G T A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXA5/MA0158.1/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GAATTTATGA
-AATTAGTG-
 A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A
A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GAATTTATGA-
--TTTTATTGC
 A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GAATTTATGA-
-NTTTTACGAC
 A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C