Information for 4-TGGTTGYCTGCTG (Motif 5)

A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G
Reverse Opposite:
G T A C C G T A A C T G A T G C C G T A T A C G C T G A A G T C C G T A T C G A A T G C G T A C G T C A
p-value:1e-12
log p-value:-2.875e+01
Information Content per bp:1.765
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets74.6 +/- 11.7bp
Average Position of motif in Background44.5 +/- 38.3bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTGYCTGCTG--
NNGCGTGTGTGCNGCN
 A C G T A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGGTTGYCTGCTG
GTCATGCHTGRCTGS--
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTGYCTGCTG--
NNNNTTGTGTGCTTNN
 A C G T A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TGGTTGYCTGCTG-----
---TNTCCTGCTGTGNNG
 A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PH0170.1_Tgif2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGTTGYCTGCTG---
GTATTGACAGCTNNTT
 A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G A C G T A C G T A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TGGTTGYCTGCTG-----
---TCNCCTGCTGNGNNN
 A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

TGIF1/MA0796.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGGTTGYCTGCTG---
----TGACAGCTGTCA
 A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TGGTTGYCTGCTG---
-GGCCYCCTGCTGDGH
 A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:TGGTTGYCTGCTG
--------NGCTN
 A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGGTTGYCTGCTG-----
---NNTCCTGCTGTGNNN
 A C G T A C T G A T C G A C G T A C G T A C T G G A C T A T G C C G A T A T C G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C