Information for 7-ACAAATCATT (Motif 21)

C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C T G A C G T
p-value:1e-5
log p-value:-1.252e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.3 +/- 17.9bp
Average Position of motif in Background24.8 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1/MA0038.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:ACAAATCATT-
-CAAATCACTG
 C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

MF0010.1_Homeobox_class/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:ACAAATCATT
---AATTATT
 C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T

PH0037.1_Hdx/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ACAAATCATT---
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ACAAATCATT
HNRAATCAAT
 C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACAAATCATT
GGCCATAAATCAC-
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ACAAATCATT
GCCATAAATCA--
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ACAAATCATT---
AAAAAATCAATAAT
 A C G T C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ACAAATCATT
GGCCATAAATCA--
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------ACAAATCATT
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACAAATCATT-----
TCACCCATCAATAAACA
 A C G T A C G T C G T A A G T C C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A