Information for 3-GACTACACTA (Motif 12)

C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C G T A T C G A G C T C G T A A C T G C G A T A G T C
p-value:1e-8
log p-value:-1.930e+01
Information Content per bp:1.892
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 24.1bp
Average Position of motif in Background67.6 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GACTACACTA
CGTCTAGACA-
 A C G T C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

GLI2/MA0734.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GACTACACTA
GCGACCACACTG
 A C G T A C G T C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GACTACACTA-
SSAATCCACANN
 A C G T C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GACTACACTA--
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Foxq1/MA0040.1/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GACTACACTA--
-AATAAACAATN
 C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A A C G T A C G T
A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

FOXH1/MA0479.1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GACTACACTA
TCCAATCCACA-
 A C G T A C G T C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

GFY(?)/Promoter/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GACTACACTA---
-ACTACAATTCCC
 C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A A C G T A C G T A C G T
A C G T T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GACTACACTA
--BCAGACWA
 C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

HMBOX1/MA0895.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GACTACACTA--
--GTTAACTAGN
 C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A A C G T A C G T
A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:10
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----GACTACACTA--
TACGAGACTCCTCTAAC
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A A G T C A C G T C T G A A T G C C G T A A G T C A C G T C G T A A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C