Information for 6-TYGGAGCCGGTCAGMA (Motif 10)

A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A
Reverse Opposite:
C A G T C A T G T G A C A C G T T C A G C G T A A T G C G T A C C A T G A C T G A T G C A C G T A G T C T A G C T C A G C G T A
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.669
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.10%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets33.6 +/- 23.5bp
Average Position of motif in Background65.5 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TYGGAGCCGGTCAGMA
NNAGGGACAAGGGCNC--
 A C G T A C G T A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TYGGAGCCGGTCAGMA
-CGGAGC---------
 A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.55
Offset:7
Orientation:forward strand
Alignment:TYGGAGCCGGTCAGMA
-------AGGTCA---
 A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TYGGAGCCGGTCAGMA-
-CGCGCCGGGTCACGTA
 A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A A C G T
A C G T T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TYGGAGCCGGTCAGMA
-----AGRGGTCA---
 A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:6
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----TYGGAGCCGGTCAGMA
NNNNTTGGCGCCGANNN---
 A C G T A C G T A C G T A C G T A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G A C G T A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:7
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-TYGGAGCCGGTCAGMA
TGCGGAGTGGGACTGG-
 A C G T A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.48
Offset:5
Orientation:forward strand
Alignment:TYGGAGCCGGTCAGMA
-----TRAGGTCA---
 A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.47
Offset:3
Orientation:forward strand
Alignment:TYGGAGCCGGTCAGMA
---ATCAAGGTCA---
 A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A
A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.47
Offset:-4
Orientation:reverse strand
Alignment:----TYGGAGCCGGTCAGMA
NNNNTTGGCGCCGANNN---
 A C G T A C G T A C G T A C G T A C G T A G T C A T C G A C T G G T C A A T C G T G A C G A T C A C T G A T C G C G A T A G T C T G C A A C T G G T A C G C T A
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T A C G T A C G T A C G T