Information for 3-WCARATCCATNAA (Motif 7)

C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A
Reverse Opposite:
A G C T A C G T C G T A G T C A C G A T C T A G A C T G C G T A A G C T A G T C C G A T A C T G C G T A
p-value:1e-7
log p-value:-1.790e+01
Information Content per bp:1.690
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif35.71%
Number of Background Sequences with motif390.3
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets40.2 +/- 26.6bp
Average Position of motif in Background47.9 +/- 35.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:WCARATCCATNAA--
-AAAAACCATTAAGG
 C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A A C G T A C G T
A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:WCARATCCATNAA
---AAACMATTAN
 C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A
A C G T A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:WCARATCCATNAA-----
--AGAGCCATAAAATTCG
 C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PH0088.1_Isl2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:WCARATCCATNAA---
CAAAATCAATTAATTT
 C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A A C G T A C G T A C G T
G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:WCARATCCATNAA------
--TCACCCATCAATAAACA
 C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.55
Offset:8
Orientation:forward strand
Alignment:WCARATCCATNAA-
--------ATTAAA
 C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:WCARATCCATNAA-
----GGCCATTAAC
 C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

PAX7/MA0680.1/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:WCARATCCATNAA
--TAATCGATTA-
 C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A
A C G T A C G T C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:WCARATCCATNAA
--TAATCAATTA-
 C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A
A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:WCARATCCATNAA---
AAAAACCAATTAAGAA
 C G A T A G T C C G T A C T A G C T G A C G A T T A G C A G T C G C T A A C G T A C G T C G T A C T G A A C G T A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A