Information for 17-GGCTAGGTAA (Motif 43)

A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A G T C A G T C
p-value:1e-3
log p-value:-7.725e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.0 +/- 0.0bp
Average Position of motif in Background82.3 +/- 2.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGCTAGGTAA-----
ANNNCTAGTTAACNGNN
 A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GGCTAGGTAA----
---CAGGTAAGTAT
 A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

TEF/MA0843.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGCTAGGTAA--
NGTTACGTAATN
 A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A A C G T A C G T
A C G T T C A G G A C T C G A T T C G A A G T C C T A G A G C T G C T A C G T A A G C T T C G A

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGCTAGGTAA----
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HLF/MA0043.2/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCTAGGTAA--
NGTTACGTAANN
 A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A A C G T A C G T
C A T G T C A G G C A T C A G T C T G A A G T C T C A G G A C T T G C A C G T A A G C T C T A G

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGCTAGGTAA-
-ACTAGTTAAC
 A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A A C G T
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

NFIL3/MA0025.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGCTAGGTAA---
--TTATGTAACAT
 A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T

DBP/MA0639.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGCTAGGTAA--
NGTTACGTAATN
 A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A A C G T A C G T
A G C T T C A G G A C T A C G T T C G A A G T C T C A G G A C T T G C A C G T A A G C T T G C A

GMEB2/MA0862.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGCTAGGTAA
--TTACGTAA
 A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A
A C G T A C G T A C G T C A G T C T G A G T A C A T C G A G C T T G C A T G C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GGCTAGGTAA
----AGGTCA
 A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A