Information for 22-ARADAAAGVAKCA (Motif 35)

G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A
Reverse Opposite:
A C G T A C T G G T C A A C G T A C G T A G T C C G A T A C G T A G C T G C A T A C G T A G C T C A G T
p-value:1e-3
log p-value:-7.261e+00
Information Content per bp:1.613
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.00%
Number of Background Sequences with motif399.4
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets71.7 +/- 8.3bp
Average Position of motif in Background51.0 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ARADAAAGVAKCA
AAACAGACAAAGGAAT-
 A C G T A C G T A C G T A C G T G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ARADAAAGVAKCA
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ARADAAAGVAKCA
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ARADAAAGVAKCA
AAAACAAAGG----
 A C G T G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ARADAAAGVAKCA
-RACAAWGG----
 G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ARADAAAGVAKCA-
GGAGAAAGGTGCGA
 G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ARADAAAGVAKCA
--ACAAAG-----
 G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ARADAAAGVAKCA
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:9
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------ARADAAAGVAKCA
TACTGGAAAAAAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T

SPI1/MA0080.4/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ARADAAAGVAKCA---
--AAAAAGCGGAAGTA
 G T C A T C A G G T C A C G T A C T G A G T C A C G T A T A C G T G C A T C G A A C G T G T A C C G T A A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C G T A C G T A C G T A T A C G T G A C C T A G A T C G G T C A C G T A A T C G G A C T C G T A