Information for 19-AGAGTAAGACAGA (Motif 30)

C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T C G T A A G T C A C G T A G T C A C G T
p-value:1e-3
log p-value:-7.723e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTAAGACAGA
AGGTGNCAGACAG-
 A C G T C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGAGTAAGACAGA
AGGTGHCAGACA--
 A C G T C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGAGTAAGACAGA-----
WNAGTCADAVTGAAACTN
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGAGTAAGACAGA---
-BAGTCATANTGAAAG
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGAGTAAGACAGA--
-----ATGCCAGACN
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AGAGTAAGACAGA
-----TTGACAG-
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

PB0094.1_Zfp128_1/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTAAGACAGA--
TTNGGGTACGCCNNANN
 A C G T A C G T C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGAGTAAGACAGA-----
-GATATTGACAGCTGCGT
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

SPIB/MA0081.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGAGTAAGACAGA
AGAGGAA------
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A
C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:AGAGTAAGACAGA
----CCAGACAG-
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T