Information for 1-CCKTTYMCGA (Motif 21)

A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A
Reverse Opposite:
C G A T A G T C A C T G C A G T C T G A C G T A C G T A G T C A A C T G A C T G
p-value:1e-4
log p-value:-1.078e+01
Information Content per bp:1.865
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets58.7 +/- 28.6bp
Average Position of motif in Background49.5 +/- 48.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC11/MA0651.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCKTTYMCGA--
-NTTTTACGACC
 A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A A C G T A C G T
A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

HOXC12/MA0906.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CCKTTYMCGA--
-NTTTTACGACC
 A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A A C G T A C G T
A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

HOXD11/MA0908.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CCKTTYMCGA-
-NTTTTACGAC
 A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A A C G T
A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

HOXD12/MA0873.1/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CCKTTYMCGA--
-NTTTTACGACT
 A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A A C G T A C G T
A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCKTTYMCGA--
ANTTTTACGACC
 A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A A C G T A C G T
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCKTTYMCGA--
-NTTTTACGAGN
 A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A A C G T A C G T
A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCKTTYMCGA-----
NNNTTTTACGACNTTN
 A C G T A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCKTTYMCGA-----
ANNTTTTACGACNTNN
 A C G T A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCKTTYMCGA-----
NNNATTTTACGACNNTN
 A C G T A C G T A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCKTTYMCGA-
-NTTTTACGAC
 A G T C A G T C A C G T A C G T A C G T A G C T G T C A A G T C A C T G C G T A A C G T
A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C