Information for 5-GCTTCAGTGC (Motif 13)

A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C
Reverse Opposite:
A T C G G T A C G C T A A G T C C G A T A T C G G T C A C T G A T A C G G T A C
p-value:1e-9
log p-value:-2.165e+01
Information Content per bp:1.840
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif152.0
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets52.0 +/- 22.6bp
Average Position of motif in Background49.9 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GCTTCAGTGC----
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCTTCAGTGC-
-CTYRAGTGSY
 A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C A C G T
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCTTCAGTGC-
-BTBRAGTGSN
 A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C A C G T
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCTTCAGTGC--
-CTTGAGTGGCT
 A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C A C G T A C G T
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCTTCAGTGC--
--TTGAGTGSTT
 A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C A C G T A C G T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCTTCAGTGC--
--TTAAGTGCTT
 A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C A C G T A C G T
A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GCTTCAGTGC-----
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

ISL2/MA0914.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCTTCAGTGC
--TTAAGTGC
 A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C
A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTTCAGTGC
GCTTCC----
 A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCTTCAGTGC--
--TTRAGTGSYK
 A C T G A T G C A G C T A C G T A T G C C G T A A C T G C G A T A C T G A T G C A C G T A C G T
A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T