Information for 7-CAGVCAGACADGBAGA (Motif 8)

A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
Reverse Opposite:
A C G T A G T C A C G T T A C G A G T C G A T C A C G T A T C G A C G T A T G C C G A T A C T G A C G T G T A C A C G T A T C G
p-value:1e-6
log p-value:-1.449e+01
Information Content per bp:1.713
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif84.9
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets34.0 +/- 22.2bp
Average Position of motif in Background52.1 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAGVCAGACADGBAGA
---CCAGACRSVB---
 A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CAGVCAGACADGBAGA
---CCAGACAG-----
 A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGVCAGACADGBAGA
CAAATCCAGACATCACA-
 A C G T A C G T A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAGVCAGACADGBAGA
CGAAGCACACAAAATA-
 A C G T A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGVCAGACADGBAGA
SCAGYCADGCATGAC--
 A C G T A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGVCAGACADGBAGA
BCAGACWA---------
 A C G T A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGVCAGACADGBAGA
AGCGGCACACACGCAA-
 A C G T A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAGVCAGACADGBAGA
AGGTGNCAGACAG-----
 A C G T A C G T A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGVCAGACADGBAGA
AGGTGHCAGACA------
 A C G T A C G T A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAGVCAGACADGBAGA
ATGCCAGACN------
 A T G C C G T A A C T G T C G A A G T C C G T A A T C G C G T A A T G C C G T A C A T G C T A G A G T C G T C A C T A G G T C A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T