Information for 17-NCBGHMSGRKHBGTVC (Motif 49)

A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C
Reverse Opposite:
T A C G A C T G G C T A A G T C T A C G C G T A G T A C G A C T G A T C T A C G C A T G C T G A A G T C T A C G A T C G T A C G
p-value:1e-2
log p-value:-4.898e+00
Information Content per bp:1.430
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif2220.2
Percentage of Background Sequences with motif3.50%
Average Position of motif in Targets54.9 +/- 24.1bp
Average Position of motif in Background49.7 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.48
Offset:1
Orientation:forward strand
Alignment:NCBGHMSGRKHBGTVC-
-NAGNACANNNTGTNCT
 A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C A C G T
A C G T T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:NCBGHMSGRKHBGTVC--
---GRACAGWMTGTYCTB
 A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C A C G T A C G T
A C G T A C G T A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:3
Score:0.45
Offset:3
Orientation:reverse strand
Alignment:NCBGHMSGRKHBGTVC--
---GVACAGNMTGTYCTB
 A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C A C G T A C G T
A C G T A C G T A C G T C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.44
Offset:1
Orientation:forward strand
Alignment:NCBGHMSGRKHBGTVC
-CTGTCTGG-------
 A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.44
Offset:-2
Orientation:reverse strand
Alignment:--NCBGHMSGRKHBGTVC
DCHCAGCAGGRGGCC---
 A C G T A C G T A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:6
Score:0.43
Offset:3
Orientation:reverse strand
Alignment:NCBGHMSGRKHBGTVC--
---GAACADWATGTTCTT
 A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C A C G T A C G T
A C G T A C G T A C G T C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

PB0173.1_Sox21_2/Jaspar

Match Rank:7
Score:0.43
Offset:-2
Orientation:reverse strand
Alignment:--NCBGHMSGRKHBGTVC
NNNNNGAACAATTGANN-
 A C G T A C G T A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.43
Offset:1
Orientation:reverse strand
Alignment:NCBGHMSGRKHBGTVC-
-NAGAACAGNCTGTNCT
 A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C A C G T
A C G T T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.43
Offset:1
Orientation:reverse strand
Alignment:NCBGHMSGRKHBGTVC
-NNNACCGAGAGTNNN
 A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C
A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

POL001.1_MTE/Jaspar

Match Rank:10
Score:0.42
Offset:-2
Orientation:forward strand
Alignment:--NCBGHMSGRKHBGTVC-
TTTCGAGCGGAACGGTCGC
 A C G T A C G T A C G T T A G C A T G C T C A G G A C T G T A C A T G C C T A G C T G A A C T G G C A T A T C G T C A G C G A T T A G C A T G C A C G T
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T