Information for 11-CATGGCTAAC (Motif 40)

A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C T G
p-value:1e-3
log p-value:-7.879e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.0 +/- 0.0bp
Average Position of motif in Background57.8 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CATGGCTAAC---
ACCGTGACTAATTNN
 A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PH0167.1_Tcf1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATGGCTAAC------
CCTTAGTTAACTAAAAT
 A C G T A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATGGCTAAC------
TGATTGTTAACAGTTGG
 A C G T A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CATGGCTAAC
TAATGGCGGNC
 A C G T A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CATGGCTAAC
TTGCCATGGCAACN
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CATGGCTAAC
TTGCCATGGCAACC
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PB0081.1_Tcf1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CATGGCTAAC------
ACTTAGTTAACTAAAAA
 A C G T A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

PB0159.1_Rfx4_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CATGGCTAAC--
TACCCTAGTTACCGA
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

MYBL1/MA0776.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CATGGCTAAC---
-ACCGTTAACGGT
 A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T
A C G T C T G A G T A C T A G C C A T G A G C T G C A T C G T A C T G A A G T C A T C G A C T G G A C T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CATGGCTAAC
GTTGCCATGGCAAC-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C A C G T C G T A C G T A A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T