Information for 1-AAYATTGTAKKGR (Motif 4)

C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A
Reverse Opposite:
G A C T G T A C G T C A G T C A G A C T T C G A G A T C G C T A G C T A G A C T T C G A G A C T G A C T
p-value:1e-8
log p-value:-1.881e+01
Information Content per bp:1.563
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif41.67%
Number of Background Sequences with motif390.7
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets50.8 +/- 26.6bp
Average Position of motif in Background47.2 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAYATTGTAKKGR
CTCATTGTC----
 C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AAYATTGTAKKGR
YDGHTACAWTGTADC--
 A C G T A C G T A C G T A C G T C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C A C G T A C G T

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AAYATTGTAKKGR
TWGHWACAWTGTWDC--
 A C G T A C G T A C G T A C G T C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A
G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAYATTGTAKKGR
--CTTTGT-----
 C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A
A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------AAYATTGTAKKGR
NNTNNCAATATTAG-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------AAYATTGTAKKGR
NNTNNCAATATTAG-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AAYATTGTAKKGR
---NTTTTATTGG
 C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A
A C G T A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AAYATTGTAKKGR---
NNANTTTTATTGGNNN
 C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AAYATTGTAKKGR---
NTNAATTTTATTGNATT
 A C G T C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AAYATTGTAKKGR---
-CCATTGTATGCAAAT
 C T G A C T G A A G C T C T G A C G A T C G A T C A T G A G C T C T G A C A G T A C G T C A T G C T G A A C G T A C G T A C G T
A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T