Information for 2-CCGAAAGGCC (Motif 19)

A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C T G A C T G
p-value:1e-3
log p-value:-8.572e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CCGAAAGGCC---
-----AGGCCTNG
 A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CCGAAAGGCC---
-----AGGCCTAG
 A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCGAAAGGCC-----
TCTCAAAGGTCACGAG
 A C G T A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCGAAAGGCC---
---CAAGGHCANV
 A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCGAAAGGCC-
ANGNAAAGGTCA
 A C G T A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C A C G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CCGAAAGGCC--------
----CAGGCCNNGGCCNN
 A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

MF0001.1_ETS_class/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCGAAAGGCC
ACCGGAAG---
 A C G T A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C
C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T A C G T

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCGAAAGGCC
ANCCGGAAGT--
 A C G T A C G T A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C
C T G A T G C A T A G C T G A C T A C G T C A G C T G A G C T A T C A G G A C T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCGAAAGGCC-----
TCTCAAAGGTCACCTG
 A C G T A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCGAAAGGCC-----
GGCAAAAGTCCAATAA
 A C G T A G T C A G T C A C T G C G T A C G T A C G T A A C T G A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T