Information for 7-AGAAGAAAGGCAY (Motif 12)

T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C
Reverse Opposite:
C T A G A C G T A C T G A T G C G T A C C G A T A C G T C G A T G A T C A C G T A C G T A T G C A C G T
p-value:1e-5
log p-value:-1.334e+01
Information Content per bp:1.626
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif41.67%
Number of Background Sequences with motif1183.0
Percentage of Background Sequences with motif1.87%
Average Position of motif in Targets27.4 +/- 13.5bp
Average Position of motif in Background50.9 +/- 37.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0146.1_Mafk_2/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGAAGAAAGGCAY--
GAAAAAATTGCAAGG
 T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGAAGAAAGGCAY
NGAAGC-------
 T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGAAGAAAGGCAY
-GAACAATGGN--
 T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGAAGAAAGGCAY
AAAACAAAGG---
 T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGAAGAAAGGCAY-
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGAAGAAAGGCAY-----
GGAAGGAAGGAAGGAAGG
 T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGAAGAAAGGCAY------
--AAAATATGCATAATAAA
 T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

PB0162.1_Sfpi1_2/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGAAGAAAGGCAY-
CAAATTCCGGAACC
 T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C A C G T
G T A C G C T A C T G A G C T A G C A T C G A T G T A C T G A C T C A G T C A G C G T A G C T A G T A C G T A C

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AGAAGAAAGGCAY-
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGAAGAAAGGCAY
--AACAAAGG---
 T G C A T A C G C G T A C G T A C A T G G C T A T G C A G C T A C A T G A T C G T A G C C G T A A G T C
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T