Information for 6-HHAGGGGAATTTAVCA (Motif 9)

G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A
Reverse Opposite:
C G A T A C T G A C G T A C G T G C T A C G T A C G T A C G A T A C G T A G T C A G T C G T A C A G T C A C G T C G T A C G T A
p-value:1e-11
log p-value:-2.630e+01
Information Content per bp:1.777
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.6 +/- 23.2bp
Average Position of motif in Background76.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:HHAGGGGAATTTAVCA
----GGGAATTTCC--
 G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A
A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:HHAGGGGAATTTAVCA
--NGGGGATTTCCC--
 G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A
A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:HHAGGGGAATTTAVCA
NNATTGGACTTTNGNN
 G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

PB0058.1_Sfpi1_1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-HHAGGGGAATTTAVCA
TTAAGAGGAAGTTA---
 A C G T G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:HHAGGGGAATTTAVCA
----GGGAATTTCC--
 G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A
A C G T A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:HHAGGGGAATTTAVCA
--AGAGGAA-------
 G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A
A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:HHAGGGGAATTTAVCA
--TGGGGA--------
 G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A
A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:HHAGGGGAATTTAVCA-
TTAAGGGGATTAACTAC
 G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PH0122.1_Obox2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:HHAGGGGAATTTAVCA-
TGAGGGGGATTAACTAT
 G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

MF0003.1_REL_class/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:HHAGGGGAATTTAVCA
----GGGGATTTCC--
 G A C T G C A T C G T A A C T G A C T G A C T G C T A G C G T A G C T A A C G T A C G T C G A T G T C A T A C G A G T C C G T A
A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T