Information for 21-CCGACTAGCCAAG (Motif 33)

A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A C T G A C T G
p-value:1e-6
log p-value:-1.602e+01
Information Content per bp:1.892
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets28.8 +/- 13.4bp
Average Position of motif in Background22.7 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CCGACTAGCCAAG
----BCAGACWA-
 A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CCGACTAGCCAAG---
-----AAGGCAAGTGT
 A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCGACTAGCCAAG
----CGTGCCAAG
 A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CCGACTAGCCAAG
------TGCCAA-
 A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCGACTAGCCAAG
-CGTCTAGACA--
 A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G
A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCGACTAGCCAAG
ATTTCCCAGVAKSCY--
 A C G T A C G T A C G T A C G T A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCGACTAGCCAAG--
---ACTAGCCAATCA
 A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CCGACTAGCCAAG
-----TTGCCAAG
 A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCGACTAGCCAAG-
----GGTGCCAAGT
 A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CCGACTAGCCAAG
----CCAGACAG-
 A G T C A G T C A T C G C G T A A T G C A G C T C G T A A C T G G T A C A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T