Information for 23-GCAAGCCTTTCTT (Motif 43)

A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C T G A G T C
p-value:1e-3
log p-value:-7.656e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GCAAGCCTTTCTT--
-----CCTTTGTTTT
 A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GCAAGCCTTTCTT
-----CCTTTGTT
 A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCAAGCCTTTCTT
NNGGCCACGCCTTTN--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCAAGCCTTTCTT-----
-TNNTCCTTTGTTCTNNT
 A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCAAGCCTTTCTT-----
-NNNTCCTTTGTTCTNNN
 A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCAAGCCTTTCTT-
NNGCACCTTTCTCC
 A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCAAGCCTTTCTT--
-----YCTTTGTTCC
 A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAAGCCTTTCTT
-CAAGCTT-----
 A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCAAGCCTTTCTT
-----CCWTTGTY
 A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GCAAGCCTTTCTT-
----NCCATTGTTC
 A C T G A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C