Information for 12-GGCAGGCAGGVAG (Motif 21)

A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G
Reverse Opposite:
G T A C A C G T A T C G A G T C A G T C C G A T C T A G A G T C G T A C A C G T A C T G A G T C A G T C
p-value:1e-5
log p-value:-1.166e+01
Information Content per bp:1.845
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets28.2 +/- 10.4bp
Average Position of motif in Background45.1 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGGCAGGVAG
TGGCAGNCTGCCAG
 A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGCAGGCAGGVAG-----
GGAAGGAAGGAAGGAAGG
 A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGCAGGCAGGVAG
AAGGCAAGTGT----
 A C G T A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGGCAGGVAG-
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCAGGCAGGVAG--
RGSMTBCTGGGAAAT
 A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G A C G T A C G T
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGGCAGGVAG
TTGGCATGGTGCCA-
 A C G T A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGGVAG
NGTGGGCAT--------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGGVAG
TNNGGGCAG--------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGCAGGCAGGVAG---
NGTAGGTTGGCATNNN
 A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGCAGGCAGGVAG
TBGCACGCAA----
 A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T A G T A G C C G T A A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T