Information for 11-TKSTTTGGCAAAS (Motif 20)

A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C
Reverse Opposite:
A T C G C G A T A C G T A C G T C T A G A T G C A G T C G T C A C G T A C G T A A T C G G T C A C T G A
p-value:1e-5
log p-value:-1.185e+01
Information Content per bp:1.744
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif13.64%
Number of Background Sequences with motif78.1
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets38.8 +/- 27.7bp
Average Position of motif in Background51.2 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:TKSTTTGGCAAAS
--NNTTGGCANN-
 A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:TKSTTTGGCAAAS
---CTTGGCAA--
 A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TKSTTTGGCAAAS
---NTTGGCANN-
 A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.69
Offset:4
Orientation:forward strand
Alignment:TKSTTTGGCAAAS
----TTGGCA---
 A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TKSTTTGGCAAAS--
NNNNTTGGGCACNNCN
 A C G T A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TKSTTTGGCAAAS
--GGTTGGCAT--
 A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------TKSTTTGGCAAAS
NNTGTTTATTTTGGCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TKSTTTGGCAAAS
--NGTGGGCAT--
 A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TKSTTTGGCAAAS-
NGTAGGTTGGCATNNN
 A C G T A C G T A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NFATC2/MA0152.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TKSTTTGGCAAAS
-----TGGAAAA-
 A G C T A C G T A T G C C G A T A C G T A C G T A C T G A T C G A G T C C G T A T C G A C G T A A T G C
A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T