Information for 2-AGGTAGAAAAGAA (Motif 6)

C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A
Reverse Opposite:
G C A T C A G T G A T C A G C T A C G T G C A T G A C T T A G C G A C T C G T A G A T C A G T C A G C T
p-value:1e-7
log p-value:-1.638e+01
Information Content per bp:1.613
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif32.26%
Number of Background Sequences with motif1611.9
Percentage of Background Sequences with motif3.58%
Average Position of motif in Targets51.8 +/- 28.9bp
Average Position of motif in Background50.7 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0148.1_Mtf1_2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGTAGAAAAGAA-
AAATAAGAAAAAAC
 C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

TBR1/MA0802.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGTAGAAAAGAA
AGGTGTGAAA---
 C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGGTAGAAAAGAA
AGGTGTTAAT---
 C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGTAGAAAAGAA
AAGGTGTGAAA---
 A C G T C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T A C G T

PH0067.1_Hoxc12/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGTAGAAAAGAA--
TTAGGTCGTAAAATTTC
 A C G T A C G T C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGGTAGAAAAGAA
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T A C G T C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

TBX20/MA0689.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGTAGAAAAGAA
TAGGTGTGAAG---
 A C G T C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGTAGAAAAGAA
AAGGTGTGAAAAT-
 A C G T C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGGTAGAAAAGAA--
GGAAGGAAGGAAGGAAGG
 A C G T A C G T A C G T C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

PB0182.1_Srf_2/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGGTAGAAAAGAA-----
-GTTAAAAAAAAAAATTA
 C T G A C T A G C T A G G A C T C T G A A T C G C G T A C G T A G T C A T C G A C T A G G C T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T