Information for 2-TSWCMTSMYMCTGWCC (Motif 2)

A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G C G A T A G T C C G T A A C T G A C T G C T A G A C G T A T G C C T G A A C G T A C T G C G A T A T C G C G T A
p-value:1e-10
log p-value:-2.325e+01
Information Content per bp:1.811
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif7.89%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.8 +/- 21.8bp
Average Position of motif in Background90.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TSWCMTSMYMCTGWCC-
BTGACCTCTNNHTGACCY
 A C G T A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TSWCMTSMYMCTGWCC-
TGACCTCTCNNTGACCT
 A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C A C G T
G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TSWCMTSMYMCTGWCC-
TGACCTTTGCATGACCT
 A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C A C G T
G A C T T A C G T G C A T G A C G T A C A G C T A G C T G C A T T C A G T A G C C T G A A C G T C T A G T G C A T G A C G T A C A G C T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TSWCMTSMYMCTGWCC-
TGACCTTTANTTGACCT
 A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C A C G T
G A C T C T A G T G C A T G A C A G T C G A C T A G C T G C A T T C G A A C T G C A G T A G C T A T C G C T G A G T A C A T G C A G C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TSWCMTSMYMCTGWCC-
-----TGACCTTGACCT
 A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.59
Offset:11
Orientation:reverse strand
Alignment:TSWCMTSMYMCTGWCC-
-----------TGACCT
 A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.57
Offset:11
Orientation:reverse strand
Alignment:TSWCMTSMYMCTGWCC---
-----------TGACCTYA
 A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TSWCMTSMYMCTGWCC-
-----TGACCTTGACCT
 A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.56
Offset:11
Orientation:reverse strand
Alignment:TSWCMTSMYMCTGWCC---
-----------TGACCYCT
 A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:TSWCMTSMYMCTGWCC----
-------CNNTTGACCTTTG
 A C G T A T G C C G T A A G T C G T C A A G C T A T C G G T C A A G T C G T A C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G