Information for 2-YGGTGKARGWCWW (Motif 7)

A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A
Reverse Opposite:
C G A T C G T A A C T G C G A T A G T C A G T C A C G T G T A C A G T C C G T A A G T C A G T C C T A G
p-value:1e-8
log p-value:-1.873e+01
Information Content per bp:1.822
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.79%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets66.0 +/- 19.1bp
Average Position of motif in Background54.4 +/- 13.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:YGGTGKARGWCWW
AGGTGHCAGACA-
 A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:YGGTGKARGWCWW
AGGTGNCAGACAG
 A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YGGTGKARGWCWW
--GTGGAT-----
 A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A
A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

ZBTB7C/MA0695.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--YGGTGKARGWCWW
NTCGGTGGTCGC---
 A C G T A C G T A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A
A C G T C A G T A G T C C A T G C A T G C A G T T C A G A C T G C A G T G A T C A T C G G A T C A C G T A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:YGGTGKARGWCWW
TGGGGAAGGGCM-
 A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:YGGTGKARGWCWW
AGGTCAAGGTCA-
 A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

ZBTB7A/MA0750.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-YGGTGKARGWCWW
TCGGTGGTCGCN--
 A C G T A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A
A C G T G T A C C A T G A C T G C A G T T A C G C T A G C A G T A G T C A T C G A G T C T G A C A C G T A C G T

ZBTB7B/MA0694.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--YGGTGKARGWCWW
TTCGGTGGTCGC---
 A C G T A C G T A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A
C A G T C G A T A G T C C T A G C A T G C A G T A T C G A C T G C A G T G A T C A T C G G A T C A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:YGGTGKARGWCWW
AGGTCAAGGTCA-
 A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--YGGTGKARGWCWW-
TGCGGAGTGGGACTGG
 A C G T A C G T A G T C A C T G A C T G A C G T A C T G A C T G C G T A C T A G A C T G C G T A G T A C C G A T C G T A A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G