Information for 9-TTAATAGCCATTA (Motif 19)

C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A
Reverse Opposite:
A C G T C T G A C G T A A C G T A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A
p-value:1e-5
log p-value:-1.310e+01
Information Content per bp:1.935
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif10.53%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 22.7bp
Average Position of motif in Background33.4 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TTAATAGCCATTA---
--AAAAACCATTAAGG
 C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A A C G T A C G T A C G T
A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:TTAATAGCCATTA--
-----GGCCATTAAC
 C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TTAATAGCCATTA-
----AAACMATTAN
 C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A A C G T
A C G T A C G T A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.63
Offset:5
Orientation:forward strand
Alignment:TTAATAGCCATTA-
-----ACCGATTAG
 C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

BARX1/MA0875.1/Jaspar

Match Rank:5
Score:0.62
Offset:6
Orientation:forward strand
Alignment:TTAATAGCCATTA-
------GCAATTAG
 C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:TTAATAGCCATTA-
------BCMATTAG
 C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTAATAGCCATTA-
ATGAATATTCATGAG
 A C G T C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PH0063.1_Hoxb8/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTAATAGCCATTA
TTTATTAATTGCNNGN-
 A C G T A C G T A C G T A C G T C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:TTAATAGCCATTA--
-------YCATTAMC
 C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTAATAGCCATTA
TTTAATTGCN----
 A C G T C G A T A C G T C G T A G T C A A C G T C G T A C T A G A G T C A G T C C G T A A C G T A G C T C G T A
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T A C G T A C G T