Information for 16-CRGGCWGWMMGRYARM (Motif 18)

A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A
Reverse Opposite:
A C G T A G T C A C G T C T A G A G T C A G T C A C G T A C T G G C A T A G T C C G A T A C T G A G T C A G T C A G C T A C T G
p-value:1e-5
log p-value:-1.355e+01
Information Content per bp:1.783
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif10.53%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.0 +/- 20.0bp
Average Position of motif in Background66.0 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CRGGCWGWMMGRYARM
-TGGCAGNCTGCCAG-
 A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CRGGCWGWMMGRYARM
TNNGGGCAG---------
 A C G T A C G T A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CRGGCWGWMMGRYARM
CTTGGCANNNTGCCAA-
 A C G T A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CRGGCWGWMMGRYARM
--AGGTGNCAGACAG-
 A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CRGGCWGWMMGRYARM
--GSCTGTCACTCA--
 A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CRGGCWGWMMGRYARM
-TGGCACCATGCCAA-
 A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CRGGCWGWMMGRYARM---
YCAGGCWCAGTACCAGGCTC
 A C G T A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CRGGCWGWMMGRYARM
CCTGCTGAGH------
 A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CRGGCWGWMMGRYARM
--AGGTGHCAGACA--
 A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--CRGGCWGWMMGRYARM
AACAGGAAGT--------
 A C G T A C G T A G T C T C G A A C T G A C T G A G T C C G T A A C T G C G A T G T A C G T C A A C T G C T A G G A T C C G T A C T A G T G C A
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T