Information for 15-TGGGATTAGDVDGVDA (Motif 17)

A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
Reverse Opposite:
A C G T G A C T A C T G G A T C G C T A A G T C G A C T A G T C A C G T C T G A C T G A A G C T A G T C A G T C A G T C C G T A
p-value:1e-6
log p-value:-1.405e+01
Information Content per bp:1.668
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.79%
Number of Background Sequences with motif43.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets27.0 +/- 14.1bp
Average Position of motif in Background54.9 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TGGGATTAGDVDGVDA
-GGGATTANN------
 A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TGGGATTAGDVDGVDA
-GGGATTAA-------
 A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGGGATTAGDVDGVDA
-RGGATTAR-------
 A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGGGATTAGDVDGVDA
GNGGATTAGN------
 A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGGGATTAGDVDGVDA
--GGATTAGC------
 A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGGGATTAGDVDGVDA
NNGGATTAGN------
 A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGGGATTAGDVDGVDA
-NGGATTAA-------
 A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGGGATTAGDVDGVDA
VRGGATTARN------
 A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGGGATTAGDVDGVDA
-CGGATTAN-------
 A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGGGATTAGDVDGVDA
NGGGATTA--------
 A C G T A C T G C T A G C T A G C T G A A G C T A G C T C G T A C T A G C T G A T A C G C A G T C T A G T A G C C A G T G T C A
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T