Information for 3-GGCCGGCAGVCAG (Motif 7)

A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G A G T C G T A C A C G T A C T G A G T C G T A C A C T G A T C G A G T C A G T C
p-value:1e-4
log p-value:-1.147e+01
Information Content per bp:1.780
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif6.82%
Number of Background Sequences with motif36.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets29.0 +/- 8.9bp
Average Position of motif in Background44.3 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGCCGGCAGVCAG
TGGCAGNCTGCCAG
 A C G T A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGCCGGCAGVCAG
NGTAGGTTGGCATNNN-
 A C G T A C G T A C G T A C G T A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGCCGGCAGVCAG-
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCCGGCAGVCAG
AGGTGNCAGACAG
 A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GGCCGGCAGVCAG
-----CCAGACAG
 A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGCCGGCAGVCAG
GGTTGGCAT----
 A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGCCGGCAGVCAG
-----BCAGACWA
 A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GGCCGGCAGVCAG--
-----ACAGGAAGTG
 A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGCCGGCAGVCAG--
-----CCAGACRSVB
 A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GGCCGGCAGVCAG-----
GGAAGGAAGGAAGGAAGG
 A C T G A C T G A T G C G T A C A C T G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G