Information for 3-AACAATHACATGATCC (Motif 3)

G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C
Reverse Opposite:
C T A G A C T G C G T A C G A T G A T C T C G A A C G T A C T G A G C T C G A T C G T A C G A T C A G T A C T G C G A T C G A T
p-value:1e-8
log p-value:-2.017e+01
Information Content per bp:1.628
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif13.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets85.5 +/- 4.3bp
Average Position of motif in Background50.6 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox1/MA0870.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AACAATHACATGATCC
AACAATAACATTGTT-
 G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACAATHACATGATCC
AACAATTTCAGTGTT-
 G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C
C G T A C G T A A G T C C G T A C G T A A C G T A G C T C A G T A G T C C G T A A C T G A C G T A C T G A C G T A G C T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AACAATHACATGATCC
GAAAAAATTGCAAGG---
 A C G T A C G T G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G A C G T A C G T A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AACAATHACATGATCC
CAAACAACAACACCT---
 A C G T A C G T G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T A C G T A C G T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AACAATHACATGATCC
GAACAATTGCAGTGTT-
 A C G T G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AACAATHACATGATCC
-AAATTAGCATAAT--
 G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C
A C G T G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T A C G T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AACAATHACATGATCC
NNNTAACAATTATAN-----
 A C G T A C G T A C G T A C G T G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T A C G T A C G T A C G T A C G T

JUN/MA0488.1/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AACAATHACATGATCC-
----ATGACATCATCNN
 G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A C T G C T G A A T G C T G C A C G A T G T A C C G T A A G C T G A T C G C A T G C A T

SOX21/MA0866.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AACAATHACATGATCC
AACAATGGTAGTGTT-
 G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C
C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AACAATHACATGATCC
NAACAAT----------
 A C G T G C T A C G T A T G A C G C T A G C T A G A C T G C A T T C G A A G T C G T C A A G C T C T A G C G T A C G A T T G A C A G T C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T