Information for 5-CCATTAACAYATC (Motif 6)

A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
Reverse Opposite:
A C T G C G T A C A G T C T G A A C G T C A T G A C G T A G C T C G T A C G T A A C G T A C T G C T A G
p-value:1e-11
log p-value:-2.676e+01
Information Content per bp:1.750
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif20.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets39.3 +/- 27.1bp
Average Position of motif in Background58.9 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCATTAACAYATC
YCATTAMC-----
 A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCATTAACAYATC
GGCCATTAAC-----
 A C G T A C G T A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CCATTAACAYATC
BCMATTAG------
 A C G T A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCATTAACAYATC
GCAATTAG------
 A C G T A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCATTAACAYATC
CCAATTAA------
 A C G T A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCATTAACAYATC
CTAATTAA------
 A C G T A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCATTAACAYATC
ACTAATTAAA-----
 A C G T A C G T A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T A C G T A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCATTAACAYATC
ACTAATTAGC-----
 A C G T A C G T A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C A C G T A C G T A C G T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCATTAACAYATC
GTAATTAA------
 A C G T A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCATTAACAYATC
NNCAATTANN-----
 A C G T A C G T A G T C A G T C G T C A A C G T C G A T C T G A T C G A G T A C G T C A A G C T G T C A G A C T A G T C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T