Information for 18-GAATGAATCT (Motif 26)

A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C G T A C G T A G T C C G T A A C G T A C G T A G T C
p-value:1e-5
log p-value:-1.183e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.8 +/- 23.7bp
Average Position of motif in Background43.6 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----GAATGAATCT-
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GAATGAATCT
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GAATGAATCT----
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAATGAATCT--
--ATGAATATTC
 A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

BATF::JUN/MA0462.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAATGAATCT
GAAATGACTCA
 A C G T A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T
C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAATGAATCT--
--ATGMATATDC
 A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAATGAATCT
HNRAATCAAT--
 A C G T A C G T A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAATGAATCT--
-NATGAGTCANN
 A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAATGAATCT
GGCCATAAATCA
 A C G T A C G T A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAATGAATCT--
-AATGTATCAAT
 A C T G C G T A C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T